PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 464aa    MW: 51846.8 Da    PI: 4.6886
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34140.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.53.4e-36151072103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sw en+nsfvv++  +fa+++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
    KHN34140.1  15 FLSKTYDMVDDPSTDLVVSWGENNNSFVVWNVPQFATDILPNHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGEKQLLKSIS 102
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+ks+
    KHN34140.1 103 RRKSA 107
                   **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.0E-5711104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.8E-3712104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.35E-3212104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MEGASWNSSV CVAPFLSKTY DMVDDPSTDL VVSWGENNNS FVVWNVPQFA TDILPNHFKH  60
NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGEKQLLKS ISRRKSAHVN GSQQASQVHK  120
SAAGACVEVG KFGLEEEVER LKRDKNVLMQ ELVRLRQKQQ GTDNQLQNVG QRVQSMEQRQ  180
QQMMSFLAKA MQSPGFLAQF VQQQNESSKH IPGSNKKRRL QRQEEDSLAT KDLHSSLDGH  240
IVKYQSSINE AAKALFRQIL QINNSTTQSS IKNPDVFLID DIPSAIASDS SSSSTQVSNV  300
MVPPISELTS MEVGSQFPLS CMPSNISEVQ SSPAVLGFCR SQGMETESSL LNHELNVMGA  360
DTRNMGEIDM MSTVLDEADE ADHFSPDTDG ISKLPEISDE FWELFLRPSP LTEDTEETKC  420
SSLGCGLTED QGLPSEMGNK QENFDTIQHV DCLTQQMGLH ALEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-241210717123Heat shock factor protein 1
5d5u_B3e-241210426129Heat shock factor protein 1
5d5v_B3e-241210426129Heat shock factor protein 1
5d5v_D3e-241210426129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573849.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotO818211e-141HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0B2RLS10.0A0A0B2RLS1_GLYSO; Heat stress transcription factor A-1b
TrEMBLI1JAM50.0I1JAM5_SOYBN; Uncharacterized protein
STRINGGLYMA01G44330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-123heat shock factor 3
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]